miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|108918055|gb|EC346992.1|EC346992 GGAACAAATCATGGAGGACCTCAGGACGTTAAATAAGCTTAAATCACCCAAGAGACCAGCATCTCCCTCTTCTCCAGAGC
ATCTCCCTTCTACACCTGCAGAGTCCCCTGCCCAGCGGTTCGAAGCTCGGATAGAAGATGGCAAACTCTACTATGATAAA
AGATGGTACCACAAGAGCCAAGCTATCTATCTGGAGTCAAAAGAGAACACCAAGATCAGCTGTGTGATCAGTTCTGTTGG
TGCCAATGAGATCTGGGTTCGGAAGACGAGTGACAGCACAAAGATGAGGATCTACCTGGGGCAGCTTCAGCGAGGGCTCT
TTGTGATCCGCCGGCGTTCGGCTGCGTGACACCCTCCCCTCCCCCACCGTGGCTTTTCCTCAAATGGCTTTTGGTTTTGG
TTTTTGTTCTTAAGAGAAATTAAACTTACAGGGAATAATAGCAACTCCGCCTTGGAAACGAACAACACTGTGTTACGGAT
CCTGCAACCACTTTTGTGGCTGGCCACATACTCCTTGGATTAGTTCTTGGCCCTTCCACGCAGCCACCACCTTGATCTCT
TCCATGCTTCACCTTGAGACTTTGTTACATTCAGAGGAGACACACGCACACGCGTGTGCGTGCGCACACATATACACGCA
CGCAGAAAGGGAATCTTTGTGTATGTGCATGTGTGTGCATGCATGTCTGTACACATTGGTTTTGGTTGATGAAAATGGTT
TCAGATGTCTTCATGTGTNNTACTCTTAAAGTGAGTCANNNNT




Most similar to sp|Q5RBB8|SDS3_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5RBB8|SDS3_PONAB Sin3 histone deacetylase corepressor complex
           component SDS3 OS=Pongo abelii GN=SUDS3 PE=2 SV=1
          Length = 328

 Score =  193 bits (491), Expect = 9e-49
 Identities = 97/115 (84%), Positives = 100/115 (86%)
 Frame = +2

Query: 2   EQIMEDLRTLNXXXXXXXXXXXXXXEHLPSTPAESPAQRFEARIEDGKLYYDKRWYHKSQ 181
           EQIMEDLRTLN              EHLP+TPAESPAQRFEARIEDGKLYYDKRWYHKSQ
Sbjct: 214 EQIMEDLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQ 273

Query: 182 AIYLESKENTKISCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA 346
           AIYLESK+N K+SCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA
Sbjct: 274 AIYLESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA 328